Installation

Using conda

conda install -c conda-forge -c bioconda stampede

Using pip

Notes:

• the Pypi package name is stampede-sc. After installation, the package is imported as stampede.

• the Pypi installation requires HDF5.

pip install stampede-sc

Developer installation

Clone the repo

git clone https://github.com/mhlangalab/stampede.git

Change directory into the repo

cd stampede

Create a conda environment

conda env create -n stampede -f requirements.yaml

Activate the conda environment

conda activate stampede

Install the package

pip install -e .